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	<title>Tyler Oderkirk&#039;s Blog &#187; Data visualization</title>
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	<description>&#34;Scared money don&#039;t[sic] make money&#34;</description>
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		<title>Contorting proteins</title>
		<link>http://unsyncopated.com/blog/index.php/2007/04/22/contorting-proteins/</link>
		<comments>http://unsyncopated.com/blog/index.php/2007/04/22/contorting-proteins/#comments</comments>
		<pubDate>Mon, 23 Apr 2007 01:27:17 +0000</pubDate>
		<dc:creator>Tyler</dc:creator>
				<category><![CDATA[Data visualization]]></category>
		<category><![CDATA[Food and Drink]]></category>

		<guid isPermaLink="false">http://unsyncopated.com/blog/?p=741</guid>
		<description><![CDATA[I just installed the Folding at Home client on Ubuntu. It was pretty easy thanks to this community documentation page and jpkotta&#8216;s install script which will: Download the folding binary Set up a new user for folding so your machine can fold no matter who you&#8217;re logged in as. Install an init script to handle [...]]]></description>
			<content:encoded><![CDATA[<p>						<div class="flickr-gallery image right"><a href="http://www.flickr.com/photos/flummoxer/385841661"><img class="flickr small" title="Beautiful Protein" alt="Beautiful Protein" src="http://farm1.static.flickr.com/176/385841661_32b001c788_m.jpg" /></a></div>
					<br />
I just installed the <a href="http://folding.stanford.edu/">Folding at Home</a> client on Ubuntu. It was pretty easy thanks to <a href="https://help.ubuntu.com/community/FoldingAtHome">this community documentation page</a> and <a href="http://folding.extremeoverclocking.com/user_summary.php?s=&amp;u=176643">jpkotta</a>&#8216;s install script which will:</p>
<ol>
<li>Download the folding binary</li>
<li>Set up a new user for folding so your machine can fold no matter who <em>you&#8217;re</em> logged in as.</li>
<li>Install an init script to handle starting and stopping of the folding binary.</li>
</ol>
<p>I joined <a href="http://folding.extremeoverclocking.com/team_summary.php?s=&amp;t=45104">TeamUbuntu</a> and I&#8217;ve contributed ~10 work units in a week with 4 cores @ 2ghz (watch out <a href="http://folding.extremeoverclocking.com/team_summary.php?s=&amp;t=31630">Nerds for Jesus</a>!)</p>
<p>I couldn&#8217;t find any good non-KDE visualization apps (i.e. &#8220;what&#8217;s this thing that I&#8217;m folding <em>look </em>like?&#8221;) for Folding at Home. <a href="http://jmol.sourceforge.net/">Jmol</a>, an open-source Java molecule viewer does a good job though and can export to a ray-tracer. Now I&#8217;ve just gotta script that export and figure out how to make some nice-looking movies&#8230;</p>
<p>Stay tuned for a security-minded analysis of the Linux folding client which is a closed-source app.</p>
<p>PS: <a href="http://web.archive.org/web/20061022145418/http://www.fritolay.com/fl/flstore/cgi-bin/Nutrition_ProdID_445036.htm">Doritos Fiery Habanero</a> chips are amazing. I&#8217;m considering buying Wegman&#8217;s out of their current stock &#8217;cause I bet the heat will get toned down in the next few months. They don&#8217;t compete w/ John&#8217;s <a href="http://www.buypeppersprayproducts.com/members/559840/uploaded/apolaroidspray.jpg">mace wings</a> I had for the Superbowl though&#8230;</p>
<p><strong>Update 4/10/07: </strong><a href="http://folding.extremeoverclocking.com/user_summary.php?s=&amp;u=226934">Bill</a> is gaining but I just broke onto the 2nd page of <a href="http://folding.extremeoverclocking.com/">EOC</a> results and I think I can stay ahead if he doesn&#8217;t bring his Grandma to the fight.</p>
<p><strong>Update 4/16/07: </strong>Bill passed me snap quick with some devious tactics.<strong> </strong></p>
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